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LOC101060400 translation initiation factor IF-2 [ Homo sapiens (human) ]

Gene ID: 101060400, discontinued on 2-Dec-2023

Summary

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Gene symbol
LOC101060400
Gene description
translation initiation factor IF-2
Gene type
ncRNA
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in colon (RPKM 5.2), small intestine (RPKM 1.0) and 3 other tissues See more
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Genomic context

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See LOC101060400 in Genome Data Viewer
Location:
17q21.32
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 latest, but not current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (48634804..48647513, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000017.11 Chromosome 17 Reference GRCh38.p13 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
A genome-wide study of common SNPs and CNVs in cognitive performance in the CANTAB.
EBI GWAS Catalog
Genome-wide association study of body mass index in 23 000 individuals with and without asthma.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    48634804..48647513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002958097.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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