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APOB apolipoprotein B [ Felis catus (domestic cat) ]

Gene ID: 101098863, updated on 17-Aug-2024

Summary

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Official Symbol
APOB
Official Full Name
apolipoprotein B
Primary source
VGNC:VGNC:67787
See related
EnsemblRapid:ENSFCTG00005009767
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See APOB in Genome Data Viewer
Location:
chromosome: A3
Exon count:
29
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) A3 NC_058370.1 (124022152..124060622)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) A3 NC_018725.3 (126693031..126731431)

Chromosome A3 - NC_058370.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123384593 Neighboring gene tudor domain containing 15 Neighboring gene 60S ribosomal protein L36-like Neighboring gene uncharacterized LOC111559869 Neighboring gene uncharacterized LOC123384594 Neighboring gene lipid droplet associated hydrolase Neighboring gene growth differentiation factor 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic analysis of the apolipoprotein B mRNA-editing region. Evidence for a secondary structure between the mooring sequence and the 3' efficiency element. Hersberger M, et al. J Biol Chem, 1999 Dec 3. PMID 10574922
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cholesterol transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables low-density lipoprotein particle receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoprotein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride mobilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mature chylomicron IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein B-100
Names
apolipoprotein B (including Ag(x) antigen)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058370.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    124022152..124060622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003984468.6 → XP_003984517.3  apolipoprotein B-100

    UniProtKB/TrEMBL
    M3X9R6
    Related
    ENSFCTP00005017773.1, ENSFCTT00005027358.1
    Conserved Domains (2) summary
    smart00638
    Location:41 → 593
    LPD_N; Lipoprotein N-terminal Domain
    COG0419
    Location:2083 → 2446
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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