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SYN3 synapsin III [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101145710, updated on 1-Oct-2024

Summary

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Gene symbol
SYN3
Gene description
synapsin III
See related
Ensembl:ENSGGOG00000040761
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See SYN3 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 23 NC_086018.1 (30522802..31076190, complement)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 22 NC_073246.1 (26938805..27499111, complement)

Chromosome 23 - NC_086018.1Genomic Context describing neighboring genes Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene BPI fold containing family C Neighboring gene F-box protein 7 Neighboring gene TIMP metallopeptidase inhibitor 3 Neighboring gene electron transfer flavoprotein regulatory factor 1-like Neighboring gene uncharacterized LOC109024564 Neighboring gene LARGE xylosyl- and glucuronyltransferase 1 Neighboring gene small nucleolar RNA SNORA76

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synapsin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_086018.1 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    30522802..31076190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031005415.3 → XP_030861275.1  synapsin-3 isoform X2

    Conserved Domains (4) summary
    PRK14971
    Location:380 → 570
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam02078
    Location:90 → 190
    Synapsin; N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192 → 394
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  2. XM_019018272.4 → XP_018873817.1  synapsin-3 isoform X1

    UniProtKB/TrEMBL
    A0A2I2Y534
    Related
    ENSGGOP00000029997.1
    Conserved Domains (4) summary
    PRK14971
    Location:381 → 571
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam02078
    Location:90 → 191
    Synapsin; N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:193 → 395
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  3. XM_019018273.4 → XP_018873818.1  synapsin-3 isoform X1

    UniProtKB/TrEMBL
    A0A2I2Y534
    Conserved Domains (4) summary
    PRK14971
    Location:381 → 571
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam02078
    Location:90 → 191
    Synapsin; N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:193 → 395
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  4. XM_004063365.5 → XP_004063413.1  synapsin-3 isoform X2

    See identical proteins and their annotated locations for XP_004063413.1

    Conserved Domains (4) summary
    PRK14971
    Location:380 → 570
    PRK14971; DNA polymerase III subunit gamma/tau
    pfam02078
    Location:90 → 190
    Synapsin; N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192 → 394
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  5. XM_055374322.2 → XP_055230297.1  synapsin-3 isoform X1

    UniProtKB/TrEMBL
    A0A2I2Y534

  6. XM_063704814.1 → XP_063560884.1  synapsin-3 isoform X2

  7. XM_055374325.2 → XP_055230300.1  synapsin-3 isoform X2

  8. XM_055374321.2 → XP_055230296.1  synapsin-3 isoform X1

    UniProtKB/TrEMBL
    A0A2I2Y534
Nucleotide Protein
Heading Accession and Version

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