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LOC101261392 arginine--tRNA ligase, chloroplastic/mitochondrial [ Solanum lycopersicum (tomato) ]

Gene ID: 101261392, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101261392
Gene description
arginine--tRNA ligase, chloroplastic/mitochondrial
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101261392 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (2376997..2387549)
103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (1956396..1966906)

Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene probable pectinesterase 53 Neighboring gene uncharacterized LOC101265621 Neighboring gene glucan endo-1,3-beta-glucosidase 13 Neighboring gene profilin-1 Neighboring gene microRNA MIR9471a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arginine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arginine--tRNA ligase, chloroplastic/mitochondrial; arginine--tRNA ligase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

    Range
    2376997..2387549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010315439.4 → XP_010313741.1  arginine--tRNA ligase, chloroplastic/mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A3Q7J2Z9
    Conserved Domains (4) summary
    cd07956
    Location:437 → 587
    Anticodon_Ia_Arg; Anticodon-binding domain of arginyl tRNA synthetases
    cd00671
    Location:130 → 397
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    PLN02286
    Location:13 → 590
    PLN02286; arginine-tRNA ligase
    pfam03485
    Location:15 → 102
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal domain

  2. XM_004251595.5 → XP_004251643.1  arginine--tRNA ligase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    K4DBU5
    Conserved Domains (4) summary
    cd07956
    Location:496 → 646
    Anticodon_Ia_Arg; Anticodon-binding domain of arginyl tRNA synthetases
    cd00671
    Location:189 → 456
    ArgRS_core; catalytic core domain of arginyl-tRNA synthetases
    PLN02286
    Location:72 → 649
    PLN02286; arginine-tRNA ligase
    pfam03485
    Location:74 → 161
    Arg_tRNA_synt_N; Arginyl tRNA synthetase N terminal domain
Nucleotide Protein
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