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TNP1 transition protein 1 [ Sorex araneus (European shrew) ]

Gene ID: 101537955, updated on 8-Mar-2024

Summary

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Gene symbol
TNP1
Gene description
transition protein 1
See related
EnsemblRapid:ENSSARG00000003332
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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See TNP1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) X NC_073313.1 (249601152..249601513, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545858.1 (50902986..50903347, complement)

Chromosome X - NC_073313.1Genomic Context describing neighboring genes Neighboring gene insulin like growth factor binding protein 2 Neighboring gene insulin like growth factor binding protein 5 Neighboring gene U1 spliceosomal RNA Neighboring gene tensin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics reveals gene-specific and shared regulatory sequences in the spermatid-expressed mammalian Odf1, Prm1, Prm2, Tnp1, and Tnp2 genes. Kleene KC, et al. Genomics, 2008 Aug. PMID 18562159

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatid nucleus elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in male germ cell nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatid nuclear transition protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073313.1 Reference mSorAra2.pri

    Range
    249601152..249601513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004601342.1 → XP_004601399.1  spermatid nuclear transition protein 1

    See identical proteins and their annotated locations for XP_004601399.1

    UniProtKB/TrEMBL
    F7VJM7
    Related
    ENSSARP00000002985.1, ENSSART00000003296.2
    Conserved Domains (1) summary
    pfam02079
    Location:2 → 52
    TP1; Nuclear transition protein 1
Nucleotide Protein
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