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RAG1 recombination activating 1 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101659128, updated on 20-Sep-2024

Summary

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Gene symbol
RAG1
Gene description
recombination activating 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See RAG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103958.1 (15058798..15061923, complement)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558732.1 (14050931..14054050)

NW_022103958.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport associated protein Neighboring gene small nucleolar RNA SNORA25 Neighboring gene recombination activating 2 Neighboring gene TNF receptor associated factor 6 Neighboring gene proline rich 5 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-B cell allelic exclusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of endodeoxyribonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V(D)J recombination-activating protein 1
Names
recombination activating protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103958.1 Reference ASM31398v2 Primary Assembly

    Range
    15058798..15061923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004708303.3 → XP_004708360.1  V(D)J recombination-activating protein 1

    Conserved Domains (4) summary
    pfam10426
    Location:349 → 378
    zf-RAG1; Recombination-activating protein 1 zinc-finger domain
    pfam12940
    Location:384 → 1035
    RAG1; Recombination-activation protein 1 (RAG1), recombinase
    cd16530
    Location:284 → 329
    RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
    pfam12560
    Location:7 → 286
    RAG1_imp_bd; RAG1 importin binding
Nucleotide Protein
Heading Accession and Version

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