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RAG2 recombination activating 2 [ Echinops telfairi (small Madagascar hedgehog) ]

Gene ID: 101659442, updated on 20-Sep-2024

Summary

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Gene symbol
RAG2
Gene description
recombination activating 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Echinops telfairi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
Orthologs
human mouse all
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Genomic context

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See RAG2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103958.1 (15043015..15044598)
101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558732.1 (14068250..14069833, complement)

NW_022103958.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 J2-like Neighboring gene intraflagellar transport associated protein Neighboring gene small nucleolar RNA SNORA25 Neighboring gene recombination activating 1 Neighboring gene TNF receptor associated factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in V(D)J recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V(D)J recombination-activating protein 2
Names
recombination activating protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM31398v2 Primary Assembly

Genomic

  1. NW_022103958.1 Reference ASM31398v2 Primary Assembly

    Range
    15043015..15044598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004708304.1 → XP_004708361.1  V(D)J recombination-activating protein 2

    Conserved Domains (2) summary
    pfam03089
    Location:51 → 388
    RAG2; Recombination activating protein 2
    pfam13341
    Location:414 → 491
    RAG2_PHD; RAG2 PHD domain
Nucleotide Protein
Heading Accession and Version

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