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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001286699.2 → NP_001273628.1 RNA 3'-terminal phosphate cyclase-like protein isoform b
See identical proteins and their annotated locations for NP_001273628.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks two alternate exons in the 5' region and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a. Both variants 2 and 3 encode isoform b.
- Source sequence(s)
-
AF067172, AI688431, AL158147, AL518076, BC001025, BI859171, CA422524
- Consensus CDS
-
CCDS75810.1
- UniProtKB/TrEMBL
- A0A087X1L9, Q5VZU3
- Conserved Domains (1) summary
-
- cl27058
Location:1 → 213
- RTC; RNA 3'-terminal phosphate cyclase
-
NM_001286700.2 → NP_001273629.1 RNA 3'-terminal phosphate cyclase-like protein isoform b
See identical proteins and their annotated locations for NP_001273629.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate exon in the 5' region and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a. Both variants 2 and 3 encode isoform b.
- Source sequence(s)
-
AF067172, AI688431, AL560629, BC001025, BI859171, CA422524
- Consensus CDS
-
CCDS75810.1
- UniProtKB/TrEMBL
- A0A087X1L9, Q5VZU3
- Related
- ENSP00000412000.2, ENST00000442869.5
- Conserved Domains (1) summary
-
- cl27058
Location:1 → 213
- RTC; RNA 3'-terminal phosphate cyclase
-
NM_001286701.2 → NP_001273630.1 RNA 3'-terminal phosphate cyclase-like protein isoform c
See identical proteins and their annotated locations for NP_001273630.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks five exons in the 5' region but includes an alternate 5' terminal exon, and it thus differs in its 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (c) has a distinct N-terminus and is shorter than isoform a.
- Source sequence(s)
-
AF067172, AI688431, AL158147, BI859171, CA422524, EF553527
- Consensus CDS
-
CCDS69565.1
- UniProtKB/Swiss-Prot
-
Q9Y2P8
- Related
- ENSP00000388096.2, ENST00000448872.6
- Conserved Domains (1) summary
-
- cl27058
Location:7 → 185
- RTC; RNA 3'-terminal phosphate cyclase
-
NM_005772.5 → NP_005763.3 RNA 3'-terminal phosphate cyclase-like protein isoform a
See identical proteins and their annotated locations for NP_005763.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AF067172, AI688431, BC001025, BI859171, CA422524
- Consensus CDS
-
CCDS6456.1
- UniProtKB/Swiss-Prot
- D3DRI2, Q5VYW9, Q5VZU1, Q9H9D0, Q9NY00, Q9P044, Q9Y2P8
- Related
- ENSP00000371169.4, ENST00000381750.9
- Conserved Domains (1) summary
-
- TIGR03400
Location:8 → 371
- 18S_RNA_Rcl1p; 18S rRNA biogenesis protein RCL1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
4792944..4861066
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
4798060..4866205
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)