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LOC101927093 uncharacterized LOC101927093 [ Homo sapiens (human) ]

Gene ID: 101927093, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101927093
Gene description
uncharacterized LOC101927093
See related
Ensembl:ENSG00000231421
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.3) See more
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Genomic context

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See LOC101927093 in Genome Data Viewer
Location:
17q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (30573471..30576504, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (31518114..31521147, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 29, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28892925-28893520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28893521-28894115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28896451-28897128 Neighboring gene SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28897129-28897806 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:28898485-28899162 Neighboring gene keratin 17 pseudogene 3 Neighboring gene uncharacterized LOC124903978 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8398 Neighboring gene SMAD specific E3 ubiquitin protein ligase 2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    30573471..30576504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_243789.5 RNA Sequence

    Related
    ENST00000770743.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    31518114..31521147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087359.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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