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LINC01788 long intergenic non-protein coding RNA 1788 [ Homo sapiens (human) ]

Gene ID: 101927244, updated on 10-Oct-2023

Summary

Official Symbol
LINC01788provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1788provided by HGNC
Primary source
HGNC:HGNC:52577
See related
Ensembl:ENSG00000229051 AllianceGenome:HGNC:52577
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 1.3), testis (RPKM 0.2) and 2 other tissues See more
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Genomic context

Location:
1p31.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (70706453..70786468)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (70584444..70664484)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (71172136..71252151)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378794 Neighboring gene CRISPRi-validated cis-regulatory element chr1.6877 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1197 Neighboring gene caspase 3 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:71172243-71172742 Neighboring gene MPRA-validated peak284 silencer Neighboring gene uncharacterized LOC102724572 Neighboring gene prostaglandin E receptor 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:71429249-71429748 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:71512913-71513496 Neighboring gene ZRANB2 antisense RNA 1 Neighboring gene zinc finger RANBP2-type containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125938.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158087, BC041441
    Related
    ENST00000419450.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    70706453..70786468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    70584444..70664484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)