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MALT1-AS1 MALT1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927322, updated on 8-Mar-2024

Summary

Official Symbol
MALT1-AS1provided by HGNC
Official Full Name
MALT1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55306
See related
Ensembl:ENSG00000267226 AllianceGenome:HGNC:55306
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.7), kidney (RPKM 1.0) and 17 other tissues See more
Orthologs
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Genomic context

See MALT1-AS1 in Genome Data Viewer
Location:
18q21.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (58670009..58671873, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (58871148..58873012, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (56337241..56339105, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13399 Neighboring gene ribosomal protein L9 pseudogene 31 Neighboring gene long intergenic non-protein coding RNA 3110 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13400 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9487 Neighboring gene uncharacterized LOC105372146 Neighboring gene MALT1 paracaspase Neighboring gene mitochondrial ribosomal protein L37 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13401 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13402 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13403 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:56442191-56442692 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:56449282-56450044 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:56450045-56450806 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:56456348-56457153 Neighboring gene VISTA enhancer hs1397 Neighboring gene RNA, U6 small nuclear 219, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164150.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104971
    Related
    ENST00000588144.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    58670009..58671873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    58871148..58873012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)