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PPP4R1-AS1 PPP4R1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927323, updated on 10-Oct-2023

Summary

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Official Symbol
PPP4R1-AS1provided by HGNC
Official Full Name
PPP4R1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51112
See related
Ensembl:ENSG00000263627 AllianceGenome:HGNC:51112
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.4), lung (RPKM 0.2) and 12 other tissues See more
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Genomic context

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See PPP4R1-AS1 in Genome Data Viewer
Location:
18p11.22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (9614807..9619363)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (9778188..9782744)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (9614805..9619361)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene ralA binding protein 1 Neighboring gene iroquois homeobox 4 pseudogene 1 Neighboring gene RNA, U2 small nuclear 27, pseudogene Neighboring gene protein phosphatase 4 regulatory subunit 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:9570108-9570290 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:9574228-9574738 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:9574739-9575249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13076 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9284 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9285 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9286 Neighboring gene RNA, U6 small nuclear 903, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:9643443-9644016 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:9644964-9645470 Neighboring gene long intergenic non-protein coding RNA 2856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13077 Neighboring gene keratin 18 pseudogene 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110773.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AP000902, BX108181, HY048010

  2. NR_110774.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AP000902, BX108181
    Related
    ENST00000582435.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    9614807..9619363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    9778188..9782744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases