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LOC101927345 putative ankyrin repeat domain-containing protein 20A12 [ Homo sapiens (human) ]

Gene ID: 101927345, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101927345
Gene description
putative ankyrin repeat domain-containing protein 20A12
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lung (RPKM 4.3), fat (RPKM 3.3) and 18 other tissues See more
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Genomic context

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See LOC101927345 in Genome Data Viewer
Location:
21p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (9360009..9376777, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9922701-9922962 Neighboring gene tektin 4 pseudogene 2 Neighboring gene MPRA-validated peak4333 silencer Neighboring gene SOWAHC pseudogene 2 Neighboring gene sorting nexin 18 pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9988843-9989025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:9999495-9999996 Neighboring gene uncharacterized LOC101930100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10177673-10178174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10178175-10178674 Neighboring gene protein FAM182A-like Neighboring gene NCOR1 pseudogene 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000021.9 Chromosome 21 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

General protein information

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Preferred Names
putative ankyrin repeat domain-containing protein 20A12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    9360009..9376777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011544009.3 → XP_011542311.1  putative ankyrin repeat domain-containing protein 20A12

    See identical proteins and their annotated locations for XP_011542311.1

    Conserved Domains (1) summary
    cl21528
    Location:21 → 90
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RNA

  1. XR_007067811.1 RNA Sequence

  2. XR_007067817.1 RNA Sequence

  3. XR_007067816.1 RNA Sequence

  4. XR_007067813.1 RNA Sequence

  5. XR_007067809.1 RNA Sequence

  6. XR_007067810.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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