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LINC01254 long intergenic non-protein coding RNA 1254 [ Homo sapiens (human) ]

Gene ID: 101927350, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01254provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1254provided by HGNC
Primary source
HGNC:HGNC:49870
See related
Ensembl:ENSG00000260913 AllianceGenome:HGNC:49870
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18p11.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (10405133..10414370, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (10567133..10576376, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (10405130..10414367, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371986 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:10343657-10344484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:10344485-10345311 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:10368550-10369050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:10369051-10369551 Neighboring gene uncharacterized LOC105371989 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:10404153-10404806 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:10405588-10406374 Neighboring gene uncharacterized LOC105371988 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:10406375-10407161 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:10413718-10414917 Neighboring gene APC down-regulated 1 Neighboring gene Sharpr-MPRA regulatory region 1128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13082 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:10485921-10486120 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9293 Neighboring gene NSF attachment protein gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110775.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AY726567
    Related
    ENST00000567609.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    10405133..10414370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    10567133..10576376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases