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LINC01507 long intergenic non-protein coding RNA 1507 [ Homo sapiens (human) ]

Gene ID: 101927477, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01507provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1507provided by HGNC
Primary source
HGNC:HGNC:51189
See related
AllianceGenome:HGNC:51189
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
XLOC_000303
Expression
Biased expression in kidney (RPKM 1.1), gall bladder (RPKM 0.2) and 2 other tissues See more
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Genomic context

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See LINC01507 in Genome Data Viewer
Location:
9q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (79824530..80034555)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (91982914..92192899)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (82439445..82649470)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19969 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:82187809-82188421 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19971 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19970 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28491 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28490 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19974 Neighboring gene lncRNA regulator of Akt signaling associated with HCC and RCC Neighboring gene VISTA enhancer hs1078 Neighboring gene uncharacterized LOC124902329 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:82267149-82267908 Neighboring gene VISTA enhancer hs1360 Neighboring gene TLE family member 4, transcriptional corepressor Neighboring gene NANOG hESC enhancer GRCh37_chr9:82346165-82346666 Neighboring gene NANOG hESC enhancer GRCh37_chr9:82380198-82380813 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82449531-82450161 Neighboring gene ankyrin repeat domain-containing protein 36B-like Neighboring gene uncharacterized LOC105376101 Neighboring gene uncharacterized LOC105376100 Neighboring gene nuclear pore associated protein 1 pseudogene 6 Neighboring gene VISTA enhancer hs1163 Neighboring gene uncharacterized LOC105376099 Neighboring gene OCT4 hESC enhancer GRCh37_chr9:82664925-82665426 Neighboring gene VISTA enhancer hs1004 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82757334-82758145 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:82771847-82772348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:82852704-82853204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:82853205-82853705 Neighboring gene uncharacterized LOC105376103 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:83015743-83016349 Neighboring gene nuclear pore associated protein 1 pseudogene 4 Neighboring gene MT-CO1 pseudogene 51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Circulating lncRNAs associated with occurrence of colorectal cancer progression. Shi J, et al. Am J Cancer Res, 2015. PMID 26328256, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • DKFZp686L08114

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121212.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL160168, AL699629, BJ997919

  2. NR_121213.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks three exons and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL160168, AL699629, CD708789

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    79824530..80034555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    91982914..92192899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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