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PINCR p53-induced noncoding RNA [ Homo sapiens (human) ]

Gene ID: 101927501, updated on 10-Oct-2023

Summary

Official Symbol
PINCRprovided by HGNC
Official Full Name
p53-induced noncoding RNAprovided by HGNC
Primary source
HGNC:HGNC:53590
See related
Ensembl:ENSG00000224294 AllianceGenome:HGNC:53590
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
Xp11.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (43176994..43226598)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (42583214..42632828)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (43036243..43085847)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373188 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:42780737-42781675 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20781 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:42807743-42808658 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:42835354-42836553 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:42866214-42867063 Neighboring gene SMIM15 pseudogene 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chrX:43035494-43036693 Neighboring gene NANOG hESC enhancer GRCh37_chrX:43098410-43098977 Neighboring gene inosine monophosphate dehydrogenase 1 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:43201432-43202228 Neighboring gene Nanog homeobox pseudogene 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110387.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL022158
    Related
    ENST00000440955.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    43176994..43226598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    42583214..42632828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)