U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02627 long intergenic non-protein coding RNA 2627 [ Homo sapiens (human) ]

Gene ID: 101927549, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02627provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2627provided by HGNC
Primary source
HGNC:HGNC:54106
See related
AllianceGenome:HGNC:54106
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.2) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
10q25.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (105673610..105820333, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (106563495..106710216, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (107433368..107580091, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378467 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:107309935-107310436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:107310437-107310936 Neighboring gene RNA, U6 small nuclear 463, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr10:107366422-107366602 Neighboring gene uncharacterized LOC107984266 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:107459929-107460670 Neighboring gene peptidylprolyl isomerase A pseudogene 38 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 5 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:107487000-107488199 Neighboring gene Sharpr-MPRA regulatory region 11507 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:107604842-107605394 Neighboring gene uncharacterized LOC105378468 Neighboring gene NANOG hESC enhancer GRCh37_chr10:107782439-107782949 Neighboring gene uncharacterized LOC124902553

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120625.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591363, AL731574

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    105673610..105820333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    106563495..106710216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases