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LOC101927691 uncharacterized LOC101927691 [ Homo sapiens (human) ]

Gene ID: 101927691, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927691
Gene description
uncharacterized LOC101927691
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in stomach (RPKM 1.7) and brain (RPKM 0.1) See more
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Genomic context

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Location:
6p25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (868498..876613)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (728965..737088)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (868498..876613)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene exocyst complex component 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23858 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:692466-693352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:694782-695290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:701331-701850 Neighboring gene MARK2 pseudogene 18 Neighboring gene MPRA-validated peak5620 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16818 Neighboring gene uncharacterized LOC105374873 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancers GRCh37_chr6:829333-829880 and GRCh37_chr6:829881-830426 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:839153-839702 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:862355-863554 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:867961-868143 Neighboring gene uncharacterized LOC124901236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:927074-927574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:927575-928075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:961366-961866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:961867-962367 Neighboring gene long intergenic non-protein coding RNA 1622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:995434-995953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23860 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23861 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23862 Neighboring gene NANOG hESC enhancer GRCh37_chr6:1028326-1028839 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:1066368-1067567 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:1100679-1101878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110853.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356130, CR936636

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    868498..876613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    728965..737088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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