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LOC101927846 uncharacterized LOC101927846 [ Homo sapiens (human) ]

Gene ID: 101927846, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101927846
Gene description
uncharacterized LOC101927846
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 5.4), thyroid (RPKM 4.0) and 19 other tissues See more
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Genomic context

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See LOC101927846 in Genome Data Viewer
Location:
15q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (22607605..22611068)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (20279717..20283168)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene HERC2 pseudogene 7 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:23375324-23375978 Neighboring gene HERC2 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:23311731-23312230 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:23306154-23306733 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:23263501-23264001 Neighboring gene RNA, 7SL, cytoplasmic 495, pseudogene Neighboring gene golgin A8 family member I, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6257 Neighboring gene WHAMM pseudogene 3 Neighboring gene zinc finger FYVE-type containing 9 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    22607605..22611068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751437.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    3502007..3505407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069221.1 RNA Sequence

  2. XR_007069222.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187604.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    251941..255404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_430715.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    20279717..20283168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085424.1 RNA Sequence

Nucleotide Protein
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