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LOC101927896 uncharacterized LOC101927896 [ Homo sapiens (human) ]

Gene ID: 101927896, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101927896
Gene description
uncharacterized LOC101927896
See related
Ensembl:ENSG00000235726
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101927896 in Genome Data Viewer
Location:
2q37.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (234793178..234888889, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (235282288..235377949, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:235596500-235597125 Neighboring gene Sharpr-MPRA regulatory region 2610 Neighboring gene long intergenic non-protein coding RNA 1173 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235602982-235604181 Neighboring gene NANOG hESC enhancer GRCh37_chr2:235619073-235619654 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 10 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235673486-235674685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235681449-235681948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235680947-235681448 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:235742667-235743866 Neighboring gene Sharpr-MPRA regulatory region 15004 Neighboring gene uncharacterized LOC105373937 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:235810653-235811216 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:235840873-235841418 Neighboring gene uncharacterized LOC105373938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:235843604-235844104

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. Speek M. Mol Cell Biol, 2001 Mar. PMID 11238933, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    234793178..234888889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959457.2 RNA Sequence

  2. XR_007088126.1 RNA Sequence

  3. XR_007088125.1 RNA Sequence

  4. XR_007088127.1 RNA Sequence

    Related
    ENST00000825589.1

  5. XR_007088128.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    235282288..235377949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072937.1 RNA Sequence

  2. XR_007072936.1 RNA Sequence

  3. XR_007072939.1 RNA Sequence

  4. XR_007072938.1 RNA Sequence

  5. XR_007072940.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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