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ZNF516-AS1 ZNF516 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927989, updated on 10-Oct-2023

Summary

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Official Symbol
ZNF516-AS1provided by HGNC
Official Full Name
ZNF516 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55324
See related
Ensembl:ENSG00000265778 AllianceGenome:HGNC:55324
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.2), endometrium (RPKM 0.9) and 25 other tissues See more
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Genomic context

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Location:
18q23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (76491652..76493918)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (76720332..76722596)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (74203608..74205874)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372210 Neighboring gene uncharacterized LOC105372209 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73974705-73975358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:73977965-73978464 Neighboring gene uncharacterized LOC105372211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74073833-74074334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74074335-74074834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74083239-74083841 Neighboring gene zinc finger protein 516 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74102627-74103144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74116826-74117662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13507 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9551 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9550 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74123937-74124497 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:74135201-74135702 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_50380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74158054-74158632 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74158633-74159211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74159212-74159789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74160675-74161176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74161177-74161676 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9553 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74169047-74169548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74169549-74170048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74171461-74172058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74172059-74172656 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:74188803-74190002 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74191127-74191698 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74191699-74192269 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13508 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13509 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9556 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9557 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13510 Neighboring gene ZNF516 divergent transcript Neighboring gene Sharpr-MPRA regulatory region 8201 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240354-74240994 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:74240995-74241633 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:74241634-74242273 Neighboring gene long intergenic non-protein coding RNA 908

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_136504.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018413, BG329748
    Related
    ENST00000581996.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    76491652..76493918
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    76720332..76722596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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