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LOC101927995 uncharacterized LOC101927995 [ Homo sapiens (human) ]

Gene ID: 101927995, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101927995
Gene description
uncharacterized LOC101927995
See related
Ensembl:ENSG00000289450
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101927995 in Genome Data Viewer
Location:
3p24.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (30349791..30469380)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (30352264..30471784)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906224 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_69363 Neighboring gene uncharacterized LOC124909358 Neighboring gene small nucleolar RNA U3 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:30383595-30384794 Neighboring gene GATA motif-containing MPRA enhancer 299 Neighboring gene Sharpr-MPRA regulatory region 15230 Neighboring gene uncharacterized LOC105377013 Neighboring gene Sharpr-MPRA regulatory region 9798 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19624 Neighboring gene long intergenic non-protein coding RNA 1985 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:30590862-30591747 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:30592706-30593238 Neighboring gene NANOG hESC enhancer GRCh37_chr3:30593324-30593858 Neighboring gene HNF1 motif-containing MPRA enhancer 129 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14158 Neighboring gene transforming growth factor beta receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    30349791..30469380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_427323.4 RNA Sequence

  2. XR_001740628.2 RNA Sequence

  3. XR_007095856.1 RNA Sequence

  4. XR_001740627.2 RNA Sequence

  5. XR_427322.4 RNA Sequence

    Related
    ENST00000701024.2

  6. XR_001740626.2 RNA Sequence

    Related
    ENST00000690036.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    30352264..30471784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073395.1 RNA Sequence

  2. XR_007073400.1 RNA Sequence

  3. XR_007073394.1 RNA Sequence

  4. XR_007073397.1 RNA Sequence

  5. XR_007073392.1 RNA Sequence

  6. XR_007073398.1 RNA Sequence

  7. XR_007073396.1 RNA Sequence

  8. XR_007073399.1 RNA Sequence

  9. XR_007073393.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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