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LINC01943 long intergenic non-protein coding RNA 1943 [ Homo sapiens (human) ]

Gene ID: 101928173, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01943provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1943provided by HGNC
Primary source
HGNC:HGNC:52767
See related
Ensembl:ENSG00000280721 AllianceGenome:HGNC:52767
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 2.4), lymph node (RPKM 1.6) and 12 other tissues See more
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Genomic context

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See LINC01943 in Genome Data Viewer
Location:
2p11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (87439523..87459096, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (87451618..87471191, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (87666646..87667016, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907854 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91757725-91758235 Neighboring gene uncharacterized LOC105377635 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87581544-87582388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87582389-87583233 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87623699-87624202 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87624203-87624704 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87633283-87633789 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87633790-87634295 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87641303-87641844 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87641845-87642385 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87642477-87643119 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87643120-87643761 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87643890-87644537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87644538-87645184 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87645185-87645831 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87645832-87646477 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87720936-87721436 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87647813-87648776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87648777-87649739 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87724395-87725207 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:87756227-87756812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87762086-87762942 Neighboring gene uncharacterized LOC124906032 Neighboring gene cytoskeleton regulator RNA Neighboring gene NK cell activity associated lncRNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:87826545-87827046 Neighboring gene uncharacterized LOC107985909

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187136.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068279, AC133644
    Related
    ENST00000625410.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    87439523..87459096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    87451618..87471191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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