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IGFBP-AS1 IGFBP5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928278, updated on 22-Oct-2024

Summary

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Official Symbol
IGFBP-AS1provided by HGNC
Official Full Name
IGFBP5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55655
See related
Ensembl:ENSG00000223874 AllianceGenome:HGNC:55655
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See IGFBP-AS1 in Genome Data Viewer
Location:
2q35
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (216694446..216811073)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (217176876..217293516)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (217559169..217675796)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:217508368-217508942 Neighboring gene insulin like growth factor binding protein 2 Neighboring gene uncharacterized LOC124900515 Neighboring gene insulin like growth factor binding protein 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12306 Neighboring gene ribosomal protein L31 pseudogene 14 Neighboring gene RNA, 5S ribosomal pseudogene 120 Neighboring gene fatty acid binding protein 5 pseudogene 14 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:217706511-217707710 Neighboring gene uncharacterized LOC124907978 Neighboring gene uncharacterized LOC124907979

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC007563.3, AC007563.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187138.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007563

  2. NR_187139.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007563
    Related
    ENST00000772330.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    216694446..216811073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    217176876..217293516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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