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CELF2-DT CELF2 divergent transript [ Homo sapiens (human) ]

Gene ID: 101928322, updated on 10-Oct-2023

Summary

Official Symbol
CELF2-DTprovided by HGNC
Official Full Name
CELF2 divergent transriptprovided by HGNC
Primary source
HGNC:HGNC:54157
See related
AllianceGenome:HGNC:54157
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward brain (RPKM 1.1) See more
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Genomic context

See CELF2-DT in Genome Data Viewer
Location:
10p14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (10419538..10462349, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (10430281..10472756, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (10461501..10504312, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984207 Neighboring gene cut like homeobox 2 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:10409107-10409607 Neighboring gene NANOG hESC enhancer GRCh37_chr10:10570129-10570630 Neighboring gene CUGBP Elav-like family member 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2120 Neighboring gene NANOG hESC enhancer GRCh37_chr10:10631025-10631575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2991 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:10693065-10693682 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2121 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:10738713-10739255 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:10809675-10809828 Neighboring gene ORMDL1 pseudogene 1 Neighboring gene surfactant associated 1, lncRNA

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120637.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL583859

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    10419538..10462349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    10430281..10472756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)