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LOC101928453 uncharacterized LOC101928453 [ Homo sapiens (human) ]

Gene ID: 101928453, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928453
Gene description
uncharacterized LOC101928453
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.8) See more
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Genomic context

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Location:
10p13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (14074284..14087881)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (14087347..14100946)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (14116283..14129880)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene FERM domain containing 4A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:13912798-13913451 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:13922897-13923786 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:13923787-13924677 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:13924678-13925567 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3067 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:13946263-13946779 Neighboring gene nuclear transport factor 2 pseudogene 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:13984208-13984392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:13987981-13988481 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:14013273-14014244 Neighboring gene uncharacterized LOC105376425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3068 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:14073952-14074117 Neighboring gene NANOG hESC enhancer GRCh37_chr10:14135940-14136630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14140561-14141060 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:14209403-14209904 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:14209905-14210404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14217447-14217946 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:14219306-14219467 Neighboring gene Sharpr-MPRA regulatory region 4256 Neighboring gene uncharacterized LOC124902378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3069 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:14297701-14297910 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_11398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14406081-14406580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:14414401-14414901 Neighboring gene microRNA 4293

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120638.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157896, AL607075

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    14074284..14087881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    14087347..14100946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases