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LINC01492 long intergenic non-protein coding RNA 1492 [ Homo sapiens (human) ]

Gene ID: 101928496, updated on 17-Jun-2024

Summary

Official Symbol
LINC01492provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1492provided by HGNC
Primary source
HGNC:HGNC:51149
See related
Ensembl:ENSG00000225564 AllianceGenome:HGNC:51149
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01492 in Genome Data Viewer
Location:
9q31.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (103140528..103325033, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (115314201..115498723, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (105902810..106087315, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene cylicin 2 Neighboring gene uncharacterized LOC105376191 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:105948847-105949410 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:105949411-105949974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:105999467-106000068 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:106000069-106000669 Neighboring gene NANOG hESC enhancer GRCh37_chr9:106027846-106028395 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104292 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_104318 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:106233209-106234408 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:106477063-106477652 Neighboring gene RNA, 5S ribosomal pseudogene 291 Neighboring gene uncharacterized LOC105376192

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of Alzheimer's disease with psychotic symptoms.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121578.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL589823, AL589844
    Related
    ENST00000411575.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    103140528..103325033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    115314201..115498723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)