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GTF2A1-AS1 GTF2A1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928504, updated on 10-Oct-2023

Summary

Official Symbol
GTF2A1-AS1provided by HGNC
Official Full Name
GTF2A1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56195
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 4.0), thyroid (RPKM 0.9) and 16 other tissues See more
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Genomic context

See GTF2A1-AS1 in Genome Data Viewer
Location:
14q31.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (81221218..81223380)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (75433393..75435552)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (81687562..81689724)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928462 Neighboring gene uncharacterized LOC105370594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8824 Neighboring gene general transcription factor IIA subunit 1 Neighboring gene GTF2A1 intron CAGE-defined high expression enhancer Neighboring gene small nucleolar RNA, H/ACA box 79 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5985 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8828 Neighboring gene dynein light chain LC8-type 1 pseudogene 1 Neighboring gene uracil-DNA glycosylase pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135252.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI126288, BC040628, BX104080, HY093813

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    81221218..81223380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    75433393..75435552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)