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LINC01467 long intergenic non-protein coding RNA 1467 [ Homo sapiens (human) ]

Gene ID: 101928559, updated on 17-Sep-2024

Summary

Official Symbol
LINC01467provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1467provided by HGNC
Primary source
HGNC:HGNC:50911
See related
Ensembl:ENSG00000258977 AllianceGenome:HGNC:50911
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.6) See more
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Genomic context

See LINC01467 in Genome Data Viewer
Location:
14q31.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (81605347..81623061, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (75820746..75838461, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (82071691..82089405, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:81915824-81916798 Neighboring gene long intergenic non-protein coding RNA 2308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8829 Neighboring gene MPRA-validated peak2221 silencer Neighboring gene SEL1L adaptor subunit of SYVN1 ubiquitin ligase Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:81999985-82000484 Neighboring gene NANOG hESC enhancer GRCh37_chr14:82004271-82004943 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8830 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:82027640-82028183 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:82079661-82080436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:82146715-82147516 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 2 Neighboring gene uncharacterized LOC107984704 Neighboring gene long intergenic non-protein coding RNA 2311

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110074.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC029835
    Related
    ENST00000554211.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    81605347..81623061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    75820746..75838461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)