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LOC101928573 uncharacterized LOC101928573 [ Homo sapiens (human) ]

Gene ID: 101928573, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928573
Gene description
uncharacterized LOC101928573
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928573 in Genome Data Viewer
Location:
6p22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (20265627..20333357)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (20137743..20205442)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374965 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:20092424-20092927 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:20127115-20127242 Neighboring gene membrane bound O-acyltransferase domain containing 1 Neighboring gene NANOG hESC enhancer GRCh37_chr6:20188894-20189395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24123 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:20206230-20206981 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16977 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:20213228-20213728 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:20266729-20267928 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:20291927-20292228 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24126 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24127 Neighboring gene uncharacterized LOC124901272 Neighboring gene uncharacterized LOC124901482 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:20402023-20402547 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:20411388-20411888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:20411889-20412389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24128 Neighboring gene RNA, 7SL, cytoplasmic 128, pseudogene Neighboring gene E2F transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    20265627..20333357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059489.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    20137743..20205442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076608.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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