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LINC02189 long intergenic non-protein coding RNA 2189 [ Homo sapiens (human) ]

Gene ID: 101928614, updated on 17-Sep-2024

Summary

Official Symbol
LINC02189provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2189provided by HGNC
Primary source
HGNC:HGNC:53051
See related
Ensembl:ENSG00000260026 AllianceGenome:HGNC:53051
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 6.1) See more
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Genomic context

See LINC02189 in Genome Data Viewer
Location:
16q24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (86720684..86721959, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (92788830..92790105, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (86754290..86755565, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86600570-86601154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86601155-86601738 Neighboring gene NANOG hESC enhancer GRCh37_chr16:86603947-86604448 Neighboring gene FOXC2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86613015-86613636 Neighboring gene forkhead box C2 Neighboring gene forkhead box L1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86643521-86644020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86644136-86644702 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86655227-86655748 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86679869-86680369 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:86697509-86698708 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7832 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:86733288-86733475 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86733737-86734644 Neighboring gene long intergenic non-protein coding RNA 2188 Neighboring gene Sharpr-MPRA regulatory region 159 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr16:86775893-86776639 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:86780915-86781458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:86782557-86783058 Neighboring gene Sharpr-MPRA regulatory region 6377 Neighboring gene uncharacterized LOC105371392

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135181.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI207158, BC041439, BC062224
    Related
    ENST00000563331.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    86720684..86721959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    92788830..92790105 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)