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BNAT1 breast cancer associated ESR1 regulating natural antisense transcript 1 [ Homo sapiens (human) ]

Gene ID: 101928745, updated on 10-Oct-2023

Summary

Official Symbol
BNAT1provided by HGNC
Official Full Name
breast cancer associated ESR1 regulating natural antisense transcript 1provided by HGNC
Primary source
HGNC:HGNC:56666
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LL21NC02-21A1.1
Expression
Broad expression in kidney (RPKM 6.4), fat (RPKM 4.4) and 18 other tissues See more
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Genomic context

Location:
21q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (45403806..45406362, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (43769585..43772119, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46790350-46790860 Neighboring gene uncharacterized LOC124905041 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:46796710-46796898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46799692-46800692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46800693-46801692 Neighboring gene MT-CO1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46808325-46809136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46812138-46812638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46824235-46824935 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46827875-46828666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46828667-46829459 Neighboring gene COL18A1 antisense RNA 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46833102-46833725 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46834349-46834972 Neighboring gene collagen type XVIII alpha 1 chain Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46834973-46835596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:46838464-46839218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46839219-46839973 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46839974-46840729 Neighboring gene COL18A1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46841485-46842239 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46844008-46844605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:46844606-46845204

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183526.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322562
  2. NR_183527.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322562
  3. NR_183528.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322562

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    45403806..45406362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791815.1 Reference GRCh38.p14 PATCHES

    Range
    21041..23597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    43769585..43772119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)