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TMEM26-AS1 TMEM26 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928781, updated on 17-Jun-2024

Summary

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Official Symbol
TMEM26-AS1provided by HGNC
Official Full Name
TMEM26 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51209
See related
AllianceGenome:HGNC:51209
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 1.7), testis (RPKM 1.0) and 14 other tissues See more
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Genomic context

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See TMEM26-AS1 in Genome Data Viewer
Location:
10q21.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (61452639..61493433)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (62309405..62350194)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (63212397..63253191)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378323 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3396 Neighboring gene Sharpr-MPRA regulatory region 6196 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:62968524-62968739 Neighboring gene MPRA-validated peak953 silencer Neighboring gene uncharacterized LOC124900292 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:63169609-63170808 Neighboring gene NANOG hESC enhancer GRCh37_chr10:63174492-63174993 Neighboring gene MPRA-validated peak956 silencer Neighboring gene Sharpr-MPRA regulatory region 6107 Neighboring gene transmembrane protein 26 Neighboring gene uncharacterized LOC124902548 Neighboring gene MPRA-validated peak957 silencer Neighboring gene uncharacterized LOC124902535 Neighboring gene MPRA-validated peak958 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr10:63403079-63403697 Neighboring gene ciliary associated calcium binding coiled-coil 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120643.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BC041470

  2. NR_120644.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks multiple exons and contains alternate 5' and 3' terminal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BX100788

  3. NR_120645.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks multiple exons and contains alternate 5' and 3' exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL356952

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    61452639..61493433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    62309405..62350194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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