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PEX5L-AS2 PEX5L antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 101928790, updated on 22-Oct-2024

Summary

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Official Symbol
PEX5L-AS2provided by HGNC
Official Full Name
PEX5L antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:41252
See related
Ensembl:ENSG00000244302 AllianceGenome:HGNC:41252
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 6.8) See more
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Genomic context

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See PEX5L-AS2 in Genome Data Viewer
Location:
3q26.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (179898194..179921899)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (182701771..182725425)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (179615982..179639687)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:179370658-179371301 Neighboring gene ubiquitin specific peptidase 13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:179446047-179446626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:179446627-179447205 Neighboring gene uncharacterized LOC124909464 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20871 Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20872 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20873 Neighboring gene uncharacterized LOC124909463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14924 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:179732143-179732642 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14925 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:179791123-179791788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:179796465-179796989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:179819851-179820351 Neighboring gene uncharacterized LOC124909465

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • PEX5L antisense RNA 2 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110059.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC092939, BG186146, HY048179
    Related
    ENST00000462801.3

  2. NR_110060.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5' most exon resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC092939, BG186146, HY052832

  3. NR_110061.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5' structure resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC092939, BG186146, HY015924

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    179898194..179921899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    182701771..182725425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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