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LOC101928796 uncharacterized LOC101928796 [ Homo sapiens (human) ]

Gene ID: 101928796, updated on 10-Oct-2023

Summary

Gene symbol
LOC101928796
Gene description
uncharacterized LOC101928796
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.6), fat (RPKM 0.4) and 8 other tissues See more
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Genomic context

Location:
21q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (45972970..45974953)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (44347347..44349333)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (47392884..47394867)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene poly(rC) binding protein 3 Neighboring gene MPRA-validated peak4427 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47255439-47255946 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47257017-47257560 Neighboring gene PCBP3 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47274544-47275220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47275221-47275896 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr21:47278335-47279534 Neighboring gene uncharacterized LOC124905044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47300489-47301293 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47308837-47309710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47309711-47310583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47312061-47312782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47317748-47318248 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47318249-47318749 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:47336390-47336616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47339089-47339588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47371642-47372327 Neighboring gene Sharpr-MPRA regulatory region 9072 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47393951-47394751 Neighboring gene uncharacterized LOC105372841 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:47401442-47402304 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:47402305-47403165 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47414705-47415520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:47415521-47416336 Neighboring gene collagen type VI alpha 1 chain

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ011932, HY013646

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    45972970..45974953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    44347347..44349333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)