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CAMTA1-AS1 CAMTA1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101928836, updated on 10-Oct-2023

Summary

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Official Symbol
CAMTA1-AS1provided by HGNC
Official Full Name
CAMTA1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40856
See related
AllianceGenome:HGNC:40856
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CAMTA1-AS1 in Genome Data Viewer
Location:
1p36.23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (7440567..7441617, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (6969985..6971035, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene calmodulin binding transcription activator 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7433523-7434023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7438503-7439129 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7439130-7439755 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7439756-7440382 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7440383-7441007 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7448189-7448726 Neighboring gene CAMTA1 intronic transcript 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:7461491-7462690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7463312-7463812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7469057-7469988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7469989-7470920 Neighboring gene CAMTA1 antisense RNA 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:7491149-7491650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7517439-7518106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7530650-7531194 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7532917-7533608 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7551761-7552396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7560506-7561006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7561007-7561507 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7562099-7562599 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7563077-7563934 Neighboring gene uncharacterized LOC105376691 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7563935-7564790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7565577-7566214 Neighboring gene MPRA-validated peak35 silencer Neighboring gene MPRA-validated peak36 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7594027-7595006 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7598278-7598983 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7643497-7643996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7646449-7647169 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7655704-7656204 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7668502-7669038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7669039-7669576 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7669577-7670113 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7670114-7670651 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7672975-7673506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7673507-7674037 Neighboring gene MPRA-validated peak37 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7685250-7685750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7695174-7696155 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7700515-7701015 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7702117-7703085 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7703871-7704371 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7710763-7711264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7711265-7711764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7717029-7717568 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7723269-7723770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 90 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7729239-7730085 Neighboring gene translation initiation factor IF-2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 185

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187278.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL365194

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    7440567..7441617 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    6969985..6971035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases