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LINC01864 long intergenic non-protein coding RNA 1864 [ Homo sapiens (human) ]

Gene ID: 101928886, updated on 17-Jun-2024

Summary

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Official Symbol
LINC01864provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1864provided by HGNC
Primary source
HGNC:HGNC:52683
See related
Ensembl:ENSG00000267522 AllianceGenome:HGNC:52683
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01864 in Genome Data Viewer
Location:
19q13.43
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (56066684..56078801)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (59165867..59177994)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (56578050..56590167)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene NLR family pyrin domain containing 8 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr19:56480507-56481706 Neighboring gene NLR family pyrin domain containing 5 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr19:56537936-56539135 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11062 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11063 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:56596377-56596878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:56596879-56597378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:56597714-56598313 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51805 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr19:56602588-56603787 Neighboring gene zinc finger protein 787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15112 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:56622697-56623374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15113 Neighboring gene uncharacterized LOC124904773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:56626767-56627443 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:56628849-56629564 Neighboring gene Sharpr-MPRA regulatory region 1998 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:56632431-56633146 Neighboring gene uncharacterized LOC124904772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110741.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC024580
    Related
    ENST00000587218.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    56066684..56078801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    59165867..59177994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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