U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01515 long intergenic non-protein coding RNA 1515 [ Homo sapiens (human) ]

Gene ID: 101928913, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC01515provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1515provided by HGNC
Primary source
HGNC:HGNC:51210
See related
AllianceGenome:HGNC:51210
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in ovary (RPKM 2.8), skin (RPKM 1.0) and 20 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC01515 in Genome Data Viewer
Location:
10q21.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (65571425..65766541)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (66434607..66629649)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (67331183..67526299)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene WW domain containing E3 ubiquitin protein ligase 2 pseudogene Neighboring gene MPRA-validated peak981 silencer Neighboring gene MPRA-validated peak982 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:67032718-67033579 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_14849 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:67085516-67086203 Neighboring gene NANOG hESC enhancer GRCh37_chr10:67169083-67169963 Neighboring gene uncharacterized LOC105378337 Neighboring gene MPRA-validated peak984 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:67374664-67375863 Neighboring gene uncharacterized LOC105378339 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_15152 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_15172 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_15180 Neighboring gene uncharacterized LOC105378340 Neighboring gene catenin alpha 3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_15277 Neighboring gene uncharacterized LOC124902440 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_15319

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. LINC01515 promotes nasopharyngeal carcinoma progression by serving as a sponge for miR-325 to up-regulate CDCA5. Liu D, et al. J Mol Histol, 2021 Jun. PMID 33770322
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC01515 promotes nasopharyngeal carcinoma progression by serving as a sponge for miR-325 to up-regulate CDCA5.
    Title: LINC01515 promotes nasopharyngeal carcinoma progression by serving as a sponge for miR-325 to up-regulate CDCA5.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120647.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CD104896, DA381152

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    65571425..65766541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_013171806.1 Reference GRCh38.p14 PATCHES

    Range
    72018..116354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    66434607..66629649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases