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LOC101928936 uncharacterized LOC101928936 [ Homo sapiens (human) ]

Gene ID: 101928936, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101928936
Gene description
uncharacterized LOC101928936
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q15
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (88525924..88539369, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (89734362..89747807, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (89235643..89249088, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377884 Neighboring gene uncharacterized LOC105377885 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:89022035-89022536 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:89060126-89061325 Neighboring gene uncharacterized LOC124901358 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:89091597-89092538 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24815 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:89239515-89240714 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17381 Neighboring gene RNA guanylyltransferase and 5'-phosphatase Neighboring gene uncharacterized LOC124901521 Neighboring gene MPRA-validated peak5946 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24816 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:89438317-89438876 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:89439995-89440553 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:89440554-89441112 Neighboring gene MPRA-validated peak5947 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:89536615-89537462 Neighboring gene MPRA-validated peak5948 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:89671756-89672682 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24817 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:89673400-89673634 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:89682583-89683204 Neighboring gene CYCS pseudogene 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110867.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK131305, AL135779

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    88525924..88539369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    89734362..89747807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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