U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101928965 uncharacterized LOC101928965 [ Homo sapiens (human) ]

Gene ID: 101928965, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC101928965
Gene description
uncharacterized LOC101928965
See related
Ensembl:ENSG00000271858
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101928965 in Genome Data Viewer
Location:
3p21.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (50365363..50368197)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (50395083..50397917)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (50402794..50405628)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene CYB561D2-LOC101928965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19905 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:50396255-50397145 Neighboring gene cytochrome b561 family member D2 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr3:50401999-50402580 and GRCh37_chr3:50402581-50403164 Neighboring gene transmembrane protein 115 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:50408702-50409233 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70577 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50425193-50425797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50425798-50426402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50426403-50427007 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50431709-50432264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50432265-50432820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50432821-50433375 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50437650-50438150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50438151-50438651 Neighboring gene MPRA-validated peak4651 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50449343-50449842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50455687-50456623 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50461353-50461897 Neighboring gene RNA, 5S ribosomal pseudogene 131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50469412-50469992 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50469993-50470573 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50484381-50484882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:50491070-50491624 Neighboring gene uncharacterized LOC105377082 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:50492179-50492733 Neighboring gene uncharacterized LOC124909378

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Readthrough LOC127898564

Readthrough gene: LOC127898564, Included gene: CYB561D2

Other Names

  • XXcos-LUCA11.4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111913.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate promoter and contains a distinct exon structure, compared to variant 1, but includes two exons found in variant 3. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
    Source sequence(s)
    Z84492
    Related
    ENST00000606665.5

  2. NR_111914.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate promoter and contains a distinct exon structure, compared to variant 1, but includes two exons found in variant 3. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
    Source sequence(s)
    Z84492

  3. NR_183061.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z84492
    Related
    ENST00000607121.5

  4. NR_183062.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z84492

  5. NR_183063.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z84492

  6. NR_183064.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z84492

  7. NR_183065.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z84492

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    50365363..50368197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    50395083..50397917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases