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LOC101929116 uncharacterized LOC101929116 [ Homo sapiens (human) ]

Gene ID: 101929116, updated on 17-Jun-2024

Summary

Gene symbol
LOC101929116
Gene description
uncharacterized LOC101929116
See related
Ensembl:ENSG00000288537
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC101929116 in Genome Data Viewer
Location:
9q33.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (126270124..126275915, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (138475925..138481715, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (129032403..129038194, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128908419-128909393 Neighboring gene VISTA enhancer hs1015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128924749-128925250 Neighboring gene uncharacterized LOC105376275 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20285 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129089674-129090325 Neighboring gene Sharpr-MPRA regulatory region 7128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129098349-129098848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129097847-129098348 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129109020-129109980 Neighboring gene multivesicular body subunit 12B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129138261-129138866 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129138867-129139471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129141601-129142508 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20287 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129177967-129178559 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129183037-129183720 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:129183721-129184405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:129185921-129186420 Neighboring gene uncharacterized LOC124902337 Neighboring gene non-coding repressor of NFAT

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_121584.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162391, AL445664
    Related
    ENST00000419853.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    126270124..126275915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    138475925..138481715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)