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LINC03093 long intergenic non-protein coding RNA 3093 [ Homo sapiens (human) ]

Gene ID: 101929172, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03093provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3093provided by HGNC
Primary source
HGNC:HGNC:56723
See related
Ensembl:ENSG00000254334 AllianceGenome:HGNC:56723
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.9) See more
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Genomic context

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See LINC03093 in Genome Data Viewer
Location:
8p21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (21298239..21309449)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (21567678..21578888)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (21155750..21166960)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379316 Neighboring gene long intergenic non-protein coding RNA 2153 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:20924620-20925236 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:20925197-20926396 Neighboring gene uncharacterized LOC124901902 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:21024826-21026025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27066 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:21227350-21227872 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:21323916-21324086 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:21349495-21350694 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102756 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21406697-21407198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21407199-21407698 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:21417498-21418697 Neighboring gene uncharacterized LOC107986922 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:21507398-21507984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21550331-21550831 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:21584471-21584972 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102784 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:21625596-21626586 Neighboring gene GDNF family receptor alpha 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:21639775-21640276 Neighboring gene olfactory receptor family 6 subfamily R member 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104677.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021355, AK057515
    Related
    ENST00000519996.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    21298239..21309449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    21567678..21578888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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