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LOC101929200 uncharacterized LOC101929200 [ Homo sapiens (human) ]

Gene ID: 101929200, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101929200
Gene description
uncharacterized LOC101929200
See related
Ensembl:ENSG00000286753
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101929200 in Genome Data Viewer
Location:
5p15.32
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (5258550..5422129, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (5186137..5350170, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ADAMTS16 divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5139649-5140215 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:5145575-5146774 Neighboring gene RN7SK pseudogene 73 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 16 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5175316-5175816 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5175817-5176317 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancers GRCh37_chr5:5179213-5179956 and GRCh37_chr5:5179957-5180699 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5182558-5183381 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5183382-5184206 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:5199611-5200127 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5241793-5242294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5242295-5242794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5271408-5272068 Neighboring gene Sharpr-MPRA regulatory region 1512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5325702-5326669 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5341091-5341592 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5341593-5342092 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5352015-5352515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22323 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5421524-5422036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:5422037-5422547 Neighboring gene ALG3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15892 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15891 Neighboring gene MT-CO1 pseudogene 30 Neighboring gene MT-CO1 pseudogene 31 Neighboring gene MT-CO2 pseudogene 30 Neighboring gene interactor of little elongation complex ELL subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15893 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5497406-5497930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5497931-5498453 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5511108-5511904 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:5520403-5521049 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:5521050-5521695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5536038-5536538 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5569545-5570081 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:5570631-5571270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5573793-5574352 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:5598283-5599482 Neighboring gene NANOG hESC enhancer GRCh37_chr5:5621457-5621987 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5651964-5652474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:5652475-5652984 Neighboring gene uncharacterized LOC105374634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. Low SK, et al. Cancer Sci, 2013 Aug. PMID 23648065, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    5258550..5422129 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742583.3 RNA Sequence

  2. XR_007059119.1 RNA Sequence

  3. XR_241729.6 RNA Sequence

    Related
    ENST00000669435.2

  4. XR_001742584.3 RNA Sequence

    Related
    ENST00000686499.1

  5. XR_007059118.1 RNA Sequence

  6. XR_002956209.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    5186137..5350170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076291.1 RNA Sequence

  2. XR_007076289.1 RNA Sequence

  3. XR_007076290.1 RNA Sequence

  4. XR_007076292.1 RNA Sequence

  5. XR_007076287.1 RNA Sequence

  6. XR_007076288.1 RNA Sequence

Nucleotide Protein
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