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LINC02428 long intergenic non-protein coding RNA 2428 [ Homo sapiens (human) ]

Gene ID: 101929448, updated on 17-Sep-2024

Summary

Official Symbol
LINC02428provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2428provided by HGNC
Primary source
HGNC:HGNC:53359
See related
AllianceGenome:HGNC:53359
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward liver (RPKM 16.6) See more
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Genomic context

See LINC02428 in Genome Data Viewer
Location:
4q24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (103425042..103439728)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (106736873..106751629)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (104346199..104360885)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene 3-hydroxybutyrate dehydrogenase 2 Neighboring gene centromere protein E Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:104119362-104119916 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:104176632-104177831 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:104228025-104228542 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:104295695-104296229 Neighboring gene NANOG hESC enhancer GRCh37_chr4:104345927-104346428 Neighboring gene TACR3 antisense RNA 1 Neighboring gene DEAD-box helicase 3 pseudogene 3 Neighboring gene tachykinin receptor 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125925.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096742, CB116995

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    103425042..103439728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    106736873..106751629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)