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LOC101929540 uncharacterized LOC101929540 [ Homo sapiens (human) ]

Gene ID: 101929540, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101929540
Gene description
uncharacterized LOC101929540
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 6.9), bone marrow (RPKM 4.7) and 24 other tissues See more
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Genomic context

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See LOC101929540 in Genome Data Viewer
Location:
10p11.1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (38403165..38435338)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (38447182..38479357)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:38644965-38645522 Neighboring gene hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 Neighboring gene septin 7 pseudogene 9 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38690995-38691866 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:38691867-38692738 Neighboring gene RNA, U6 small nuclear 1118, pseudogene Neighboring gene long intergenic non-protein coding RNA 999 Neighboring gene septin 14 pseudogene 10 Neighboring gene capicua transcriptional repressor pseudogene 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    38403165..38435338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062117.1 RNA Sequence

  2. XR_007062122.1 RNA Sequence

  3. XR_007062119.1 RNA Sequence

  4. XR_007062118.1 RNA Sequence

  5. XR_007062123.1 RNA Sequence

  6. XR_002957067.2 RNA Sequence

  7. XR_007062120.1 RNA Sequence

  8. XR_007062121.1 RNA Sequence

  9. XR_002957070.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160000.1 Reference GRCh38.p14 PATCHES

    Range
    39993..72166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007069138.1 RNA Sequence

  2. XR_007069144.1 RNA Sequence

  3. XR_007069140.1 RNA Sequence

  4. XR_007069139.1 RNA Sequence

  5. XR_007069145.1 RNA Sequence

  6. XR_007069146.1 RNA Sequence

  7. XR_007069141.1 RNA Sequence

  8. XR_007069142.1 RNA Sequence

  9. XR_007069143.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    38447182..38479357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080841.1 RNA Sequence

  2. XR_007080846.1 RNA Sequence

  3. XR_007080843.1 RNA Sequence

  4. XR_007080842.1 RNA Sequence

  5. XR_007080847.1 RNA Sequence

  6. XR_007080848.1 RNA Sequence

  7. XR_007080844.1 RNA Sequence

  8. XR_007080845.1 RNA Sequence

Nucleotide Protein
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