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LINC01395 long intergenic non-protein coding RNA 1395 [ Homo sapiens (human) ]

Gene ID: 101929557, updated on 17-Sep-2024

Summary

Official Symbol
LINC01395provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1395provided by HGNC
Primary source
HGNC:HGNC:50674
See related
Ensembl:ENSG00000281097 AllianceGenome:HGNC:50674
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01395 in Genome Data Viewer
Location:
11q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (129612116..129617269, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (129647842..129652995, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (129482011..129487164, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr11:129269826-129270022 Neighboring gene BARX homeobox 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5747 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:129310555-129311079 Neighboring gene NANOG hESC enhancer GRCh37_chr11:129323212-129323713 Neighboring gene ribosomal protein S27 pseudogene 20 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:129458354-129458956 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:129509075-129510274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129593081-129593582 Neighboring gene uncharacterized LOC124902792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129619939-129620440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:129620441-129620940 Neighboring gene uncharacterized LOC124902793 Neighboring gene Sharpr-MPRA regulatory region 8939 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:129673393-129673893

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120582.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003500, BC038579
    Related
    ENST00000631195.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    129612116..129617269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    129647842..129652995 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)