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LOC101929638 uncharacterized LOC101929638 [ Homo sapiens (human) ]

Gene ID: 101929638, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101929638
Gene description
uncharacterized LOC101929638
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in bone marrow (RPKM 2.2), spleen (RPKM 2.1) and 24 other tissues See more
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Genomic context

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See LOC101929638 in Genome Data Viewer
Location:
22q12.1-q12.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (29180263..29205832, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (29643768..29669460, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:29458189-29458956 Neighboring gene chromosome 22 open reading frame 31 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13583 Neighboring gene kringle containing transmembrane protein 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:29524988-29525196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29536985-29537486 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29537487-29537986 Neighboring gene RNA, U6 small nuclear 810, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29541773-29542473 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:29547849-29548632 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18809 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18810 Neighboring gene CRISPRi-validated cis-regulatory element chr22.1165 Neighboring gene Sharpr-MPRA regulatory region 4816 Neighboring gene RNA, U6 small nuclear 1219, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13586 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13587 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29610708-29611288 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29611289-29611868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29611869-29612448 Neighboring gene uncharacterized LOC124905099 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:29612449-29613028 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29613609-29614188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29614189-29614768 Neighboring gene uncharacterized LOC105372985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:29619669-29620170 Neighboring gene EMI domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    29180263..29205832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_430436.4 RNA Sequence

  2. XR_001755478.2 RNA Sequence

  3. XR_244419.5 RNA Sequence

  4. XR_001755477.2 RNA Sequence

  5. XR_430435.4 RNA Sequence

  6. XR_938130.3 RNA Sequence

  7. XR_938132.3 RNA Sequence

  8. XR_007068045.1 RNA Sequence

  9. XR_001755476.2 RNA Sequence

  10. XR_001755475.2 RNA Sequence

  11. XR_007068048.1 RNA Sequence

  12. XR_938134.3 RNA Sequence

  13. XR_007068056.1 RNA Sequence

  14. XR_007068046.1 RNA Sequence

  15. XR_007068047.1 RNA Sequence

  16. XR_007068053.1 RNA Sequence

  17. XR_007068055.1 RNA Sequence

  18. XR_007068054.1 RNA Sequence

  19. XR_007068050.1 RNA Sequence

  20. XR_007068051.1 RNA Sequence

  21. XR_938136.3 RNA Sequence

  22. XR_938131.3 RNA Sequence

  23. XR_007068049.1 RNA Sequence

  24. XR_007068052.1 RNA Sequence

  25. XR_007068057.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    29643768..29669460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090555.1 RNA Sequence

  2. XR_007090567.1 RNA Sequence

  3. XR_007090569.1 RNA Sequence

  4. XR_007090577.1 RNA Sequence

  5. XR_007090556.1 RNA Sequence

  6. XR_007090565.1 RNA Sequence

  7. XR_007090558.1 RNA Sequence

  8. XR_007090576.1 RNA Sequence

  9. XR_007090560.1 RNA Sequence

  10. XR_007090562.1 RNA Sequence

  11. XR_007090563.1 RNA Sequence

  12. XR_007090559.1 RNA Sequence

  13. XR_007090561.1 RNA Sequence

  14. XR_007090557.1 RNA Sequence

  15. XR_007090572.1 RNA Sequence

  16. XR_007090578.1 RNA Sequence

  17. XR_007090575.1 RNA Sequence

  18. XR_007090574.1 RNA Sequence

  19. XR_007090571.1 RNA Sequence

  20. XR_007090566.1 RNA Sequence

  21. XR_007090573.1 RNA Sequence

  22. XR_007090570.1 RNA Sequence

  23. XR_007090564.1 RNA Sequence

  24. XR_007090568.1 RNA Sequence

Nucleotide Protein
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