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LINC01372 long intergenic non-protein coding RNA 1372 [ Homo sapiens (human) ]

Gene ID: 101929736, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01372provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1372provided by HGNC
Primary source
HGNC:HGNC:50623
See related
Ensembl:ENSG00000291153 AllianceGenome:HGNC:50623
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01372 in Genome Data Viewer
Location:
7q11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (67335976..67340024)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (68555744..68559794)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (66800963..66805011)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene speedy/RINGO cell cycle regulator family member E21 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26092 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18220 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 4 Neighboring gene STAG3 cohesin complex component like 4 (pseudogene) Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:66809463-66810662 Neighboring gene uncharacterized LOC105375337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66842927-66843428 Neighboring gene Sharpr-MPRA regulatory region 817 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:66878660-66879348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66903113-66903614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:66903615-66904114 Neighboring gene NANOG hESC enhancer GRCh37_chr7:66977296-66977858 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:66980039-66980250 Neighboring gene NANOG hESC enhancer GRCh37_chr7:66987412-66987922 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:66990375-66991248 Neighboring gene MPRA-validated peak6551 silencer Neighboring gene uncharacterized LOC105375340

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_108104.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC017910
    Related
    ENST00000430244.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    67335976..67340024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    68555744..68559794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases