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LINC02597 long intergenic non-protein coding RNA 2597 [ Homo sapiens (human) ]

Gene ID: 101929866, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02597provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2597provided by HGNC
Primary source
HGNC:HGNC:53950
See related
AllianceGenome:HGNC:53950
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in appendix (RPKM 1.1), spleen (RPKM 0.7) and 6 other tissues See more
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Genomic context

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Location:
20q13.12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (45179987..45190904)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (46915887..46926804)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17945 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:43803133-43804332 Neighboring gene peptidase inhibitor 3 Neighboring gene semenogelin 1 Neighboring gene semenogelin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis. Fei Q, et al. Int J Mol Med, 2018 Jun. PMID 29568943, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187566.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049767

  2. NR_187567.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049767

  3. NR_187568.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL049767

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    45179987..45190904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    46915887..46926804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases