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TRIP4 thyroid hormone receptor interactor 4 [ Chrysemys picta bellii (western painted turtle) ]

Gene ID: 101945320, updated on 10-Oct-2024

Summary

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Gene symbol
TRIP4
Gene description
thyroid hormone receptor interactor 4
See related
Ensembl:ENSCPBG00000006093
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta bellii (sub-species: bellii)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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See TRIP4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_05 current ASM1138683v2 (GCF_011386835.1) 10 NC_088800.1 (41501043..41550185, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) 10 NC_024226.1 (2277110..2325901, complement)

Chromosome 10 - NC_088800.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene ornithine decarboxylase antizyme 2 Neighboring gene zinc finger protein 609 Neighboring gene paired amphipathic helix protein Sin3a-like Neighboring gene PCNA clamp associated factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
activating signal cointegrator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011386835.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1138683v2

Genomic

  1. NC_088800.1 Reference ASM1138683v2

    Range
    41501043..41550185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008166769.4 → XP_008164991.1  activating signal cointegrator 1 isoform X4

    UniProtKB/TrEMBL
    A0AAJ6SIS2, A0AAJ8CCE7
    Related
    ENSCPBP00000007744.1
    Conserved Domains (2) summary
    cd06554
    Location:435 → 548
    ASCH_ASC-1_like; ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain ...
    pfam06221
    Location:169 → 217
    zf-C2HC5; Putative zinc finger motif, C2HC5-type

  2. XM_024103974.3 → XP_023959742.1  activating signal cointegrator 1 isoform X5

    UniProtKB/TrEMBL
    A0AAJ7QTW7, A0AAJ8CCE9
    Conserved Domains (2) summary
    cd06554
    Location:435 → 532
    ASCH_ASC-1_like; ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain ...
    pfam06221
    Location:169 → 217
    zf-C2HC5; Putative zinc finger motif, C2HC5-type

  3. XM_065559648.1 → XP_065415720.1  activating signal cointegrator 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C3FEM5

  4. XM_065559650.1 → XP_065415722.1  activating signal cointegrator 1 isoform X3

  5. XM_065559649.1 → XP_065415721.1  activating signal cointegrator 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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